PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_4E924201A.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 342aa    MW: 36738.9 Da    PI: 6.6751
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_4E924201A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.7e-31183241259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY+++Hnh+
  Traes_1AL_4E924201A.1 183 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSDHNHP 241
                            699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-31175243IPR003657WRKY domain
PROSITE profilePS5081133.109177243IPR003657WRKY domain
SuperFamilySSF1182901.44E-26179243IPR003657WRKY domain
SMARTSM007749.4E-38182242IPR003657WRKY domain
PfamPF031066.1E-26184241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MRDLFWLSPG EQGDLSDVVR ASLHPPHQLP TPAADEEEED EYSSLLLEGG GGGGGLVVGH  60
GDEQLGMVAM MMGGNNSSRP PSSDHHVISL HSPPATTYTR PHPEPLAGML RRPGFEREGD  120
MVVGPPPEIG DRLQHMSIAH HPRVPTAMKP RKSQSKKVVC IPAPTAAPGA SGRHSTSGEV  180
VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCPARKQV ERSRTDPNML VITYTSDHNH  240
PWPTQRNALA GSTRPSSSSA AAAKIAASSS SSLAAAAARN SSNTNVDVDC AGAHHQLKQE  300
SDLDLFADMD ALSVFSSIDK IQEDDSKQQL FDPFSSGFCD YI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-19169243477Probable WRKY transcription factor 4
2lex_A6e-19169243477Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0187275e-79AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence.
GenBankAP0149665e-79AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126185e-79CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankKC9546105e-79KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572136.11e-115PREDICTED: probable WRKY transcription factor 29
TrEMBLW4ZP240.0W4ZP24_WHEAT; Uncharacterized protein
STRINGMLOC_71477.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-57WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]